During the import of products using default Magento import tool or a custom configurable products import script most likely you will face slow speed problem when trying to import a huge amount of products.
During the investigation I have founded that a time period of one product import increases with each new product added. As the result it is not possible to import 1000+ products with the Magento API.
This time period was taken by afterCommitCallback function in the app/code/core/Mage/Catalog/Model/Product.php file, to be specific, within the code from the following lines:
Mage::getSingleton('index/indexer')->processEntityAction( $this, self::ENTITY, Mage_Index_Model_Event::TYPE_SAVE );
Actually, running index after saving the product during the import process does not make any sense. Thus it was disabled in the following way:
if (!defined('IS_IMPORT')) Mage::getSingleton('index/indexer')->processEntityAction( $this, self::ENTITY, Mage_Index_Model_Event::TYPE_SAVE );
and the following code was added to the import controller:
define('IS_IMPORT', 1);
As a result, we have disabled the indexer for the import process and left it unchanged for other scripts.
PS: Unfortunately it's not possible to make this modification in other ways, since in this case Magento core model has to be modified.